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UID:481@biocityturku.fi
DTSTART;TZID=Europe/Helsinki:20190222T140000
DTEND;TZID=Europe/Helsinki:20190222T150000
DTSTAMP:20231013T063549Z
URL:https://biocityturku.fi/events/complifesci-seminar-lahti-tamminen/
SUMMARY:CompLifeSci Seminar: Lahti\, Tamminen
DESCRIPTION:Dr. Leo Lahti\, Department of Mathematics and Statistics\, Univ
 ersity of Turku\nTrends in microbiome data science\n\nand\n\nDr. Manu Tamm
 inen\, Department of Biology\, University of Turku\nUnderstanding antibiot
 ic resistance using next-generation DNA sequencing\n\nCoffee at 13:45\n\nL
 eo Lahti is Docent in applied mathematics and Academy Research Fellow at t
 he Department of Mathematics and Statistics where he leads the Computation
 al biosciences group. He obtained PhD in statistical machine learning and 
 bioinformatics in 2010 in Aalto University\, followed by a six year postdo
 ctoral period in The Netherlands and Belgium. Lahti is also a founding mem
 ber of Helsinki Computational History group and Open Knowledge Finland wor
 king groups which received Ministry of Education awards on Open Science in
  2016 and 2017\, respectively. His current research focuses on modern data
  science methods and applications in human microbiome research. More info:
  http://www.iki.fi/Leo.Lahti\n\nKey publications\nA hierarchical Ornstein-
 Uhlenbeck model for stochastic time series analysis. Ville Laitinen and Le
 o Lahti. In: Advances in Intelligent Data Analysis XVII. Springer\, 2018.\
 n\nTipping elements in the human intestinal ecosystem. Leo Lahti\, Jarkko 
 Salojärvi\, Anne Salonen\, Marten Scheffer\, and Willem M. de Vos. Nature
  Communications\, 5:4344\, 2014\n\nSignatures of ecological processes in m
 icrobial community time series. Karoline Faust\, Franziska Bauchinger\, Be
 atrice Laroche\, Sophie de Buyl\, Leo Lahti\, Alex D Washburne\, Didier Go
 nze\, and Stefanie Widder. Microbiome\, 6(120) 2018. \n\nMicrobial commun
 ities as dynamical systems. Didier Gonze\, Katharine Z Coyte\, Leo Lahti\,
  and Karoline Faust. Current Opinion in Microbiology\, 44:41–49\, 2018.\
 n\nAlchemy &amp\; algorithms: perspectives on the philosophy and history o
 f open science. Leo Lahti\, Filipe da Silva\, Markus Petteri Laine\, Viivi
  Lähteenoja\, and Mikko Tolonen. RIO Journal\, 3:e13593\, 2017.\n\n&nbsp\
 ;\n\nManu Tamminen is developing and applying single cell genome sequencin
 g techniques to gain improved insights into complex bacterial communities 
 and their role at the emergence of antibiotic resistant bacterial strains.
  He defended his doctoral thesis at the University of Helsinki and has sin
 ce carried out his research at MIT and ETH Zürich. He is currently employ
 ed as a senior lecturer of genetics at the University of Turku.\n\nKey pub
 lications\nTamminen\, M.\, Betz\, A.\, Thali\, M.\, Matthews\, B.\, Suter\
 , M. and Narwani\, A. (2018) Proteome evolution under essential resource l
 imitation. Nature Communications 9: 4650.\n\nKrismer\, J.\, Tamminen\, M.\
 , Fontana\, S.\, Zenobi\, R. and Narwani. A. (2017) Single-cell mass spect
 rometry reveals the importance of genetic diversity and plasticity for phe
 notypic variation in nitrogen limited Chlamydomonas. ISME Journal 11: 988-
 998.\n\nBrito\, I. L.\, Yilmaz\, S.\, Huang\, K.\, Xu\, L.\, Jupiter\, S.D
 .\, Jenkins\, A.P.\, Naisilisili\, W. Tamminen\, M.\, Smillie\, C.S.\, Wor
 tman\, J.R.\, Birren\, B.W.\, Xavier\, R.J.\, Blainey\, P.C.\, Singh\, A.K
 .\, Gevers\, D.\, Alm\, E.J. (2016) Mobile genes in the human microbiome a
 re structured from global to individual scales. Nature 535: 435-439\n\nSpe
 ncer\, S.*\, Tamminen\, M.*\, Preheim\, S.\, Guo\, M.\, Briggs\, A.\, Brit
 o\, I.\, Weitz\, D.\, Pitkänen\, L.\, Vigneault\, F.\, Virta\, M.\, Alm\,
  E. (2016) Massively parallel sequencing of single cells by epicPCR links 
 functional genes with phylogenetic markers. ISME Journal 10: 427-436. *Equ
 al contribution.\n\nTamminen\, M.\, Virta\, M.\, Fani\, R. &amp\; Fondi\, 
 M. (2012) Analysis of plasmid relationships through gene sharing networks.
  Molecular Biology and Evolution 29: 1225-1240\n\n&nbsp\;
CATEGORIES:BiocityTurku events
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